Description
Humana Press Inc. Microarray Data Analysis Methods And Applications by Michael J. Korenberg
In this new volume, renowned authors contribute fascinating, cutting-edge insights into microarray data analysis. Information on an array of topics is included in this innovative book including in-depth insights into presentations of genomic signal processing. Also detailed is the use of tiling arrays for large genomes analysis._x000D__x000D__x000D_The protocols follow the successful Methods in Molecular Biology (TM) series format, offering step-by-step instructions, an introduction outlining the principles behind the technique, lists of the necessary equipment and reagents, and tips on troubleshooting and avoiding pitfalls._x000D_ _x000D_
Table of Contents_x000D_
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Chapter 1_x000D_
Microarray Data Analysis: An Overview of Design, Methodology and Analysis_x000D_
Ashani T. Weeraratna and Dennis D. Taub_x000D_
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Chapter 2_x000D_
Genomic Signal Processing: From Matrix Algebra to Genetic Networks_x000D_
Orly Alter_x000D_
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Chapter 3_x000D_
Online Analysis of Microarray Data Using Artificial Neural Networks_x000D_
Braden Greer and Javed Khan_x000D_
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Chapter 4_x000D_
Signal Processing and the Design of Microarray Time Series Experiments_x000D_
Robert R. Klevecz, Caroline M. Li and James L. Bolen_x000D_
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Chapter 5_x000D_
Predictive Models of Gene Regulation: Application of Regression Methods to Microarray Data_x000D_
Debopriya Das and Michael Q. Zhang_x000D_
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Chapter 6_x000D_
Statistical Framework for Gene Expression Data Analysis_x000D_
Olga Modlich and Marc Munnes_x000D_
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Chapter 7_x000D_
Gene Expression Profiles and Prognostic Markers for Primary Breast Cancer_x000D_
Yixin Wang, Jan Kljin, Yi Zhang, David Atkins and John Foekens_x000D_
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Chapter 8_x000D_
Comparing microarray studies_x000D_
Mayte Suarez-Farinas and Marcelo O. Magnasco_x000D_
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Chapter 9_x000D_
A Pitfall in Series of Microarrays: The Position of Probes Affects the Cross Correlation of Gene Expression Profiles_x000D_
Gabor Balazsi and Zoltan N. Oltvai_x000D_
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Chapter 10_x000D_
In Depth Query of Large Genomes using Tiling Arrays_x000D_
Manoj Pratim Samanta, Waraporn Tongprasit and Viktor Stolc_x000D_
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Chapter 11_x000D_
Analysis of Comparative Genomic Hybridization Data on cDNA Microarrays_x000D_
Sven Bilke and Javed Khan_x000D_
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Chapter 12_x000D_
Integrated high-resolution genome-wide analysis of gene dosage and gene expression in human brain tumors_x000D_
Dejan Juric, Claudia Bredel, Branimir I. Sikic, and Markus Bredel_x000D_
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Chapter 13_x000D_
Progression-Associated Genes in Astrocytoma Identified by Novel Microarray Gene Expression Data Reanalysis_x000D_
Tobey J. MacDonald, Ian F. Pollack, Hideho Okada, Soumyaroop Bhattacharya, and JamesLyons-Weiler_x000D_
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Chapter 14_x000D_
Interpreting Microarray Results with Gene Ontology and MeSH Ontology_x000D_
John D. Osborne, Lihua (Julie) Zhu, Simon M. Lin, and Warren A. Kibbe_x000D_
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Chapter 15_x000D_
Incorporation of Gene Ontology Annotations to Enhance Microarray Data Analysis_x000D_
Michael F. Ochs, Aidan J. Peterson, Andrew Kossenkov, and Ghislain Bidaut_x000D_
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Chapter 16_x000D_
Predicting Survival in Follicular Lymphoma using Tissue Microarrays_x000D_
Michael J. Korenberg, Pedro Farinha, and Randy D. Gascoyne_x000D_